Stem-loop sequence dme-mir-973

Accession MI0005830
Description Drosophila melanogaster miR-973 stem-loop
Stem-loop 
a  --gu   c       c   g    u gu     uuc       -ag   u 
 cc    cgu gacuuuu gug uugg g  ugaac   gauuuua   uau u
 ||    ||| ||||||| ||| |||| |  |||||   |||||||   |||  
 gg    gca uugaaga cac agcc c  acuug   cuaaagu   aua a
-  aaac   c       a   -    u uu     --u       aaa   a
Get sequence
Deep sequencing
830 reads, 31 experiments
Genome context
Coordinates (BDGP5.0) Overlapping transcripts
X: 19445561-19445661 [+]
intergenic
Clustered miRNAs
< 10kb from dme-mir-973
dme-mir-972 X: 19445185-19445275 [+]
dme-mir-973 X: 19445561-19445661 [+]
dme-mir-974 X: 19445711-19445811 [+]
dme-mir-2499 X: 19451041-19451136 [+]
dme-mir-4966 X: 19452403-19452529 [+]
dme-mir-975 X: 19452786-19452876 [+]
dme-mir-976 X: 19452928-19453024 [+]
dme-mir-977 X: 19453055-19453153 [+]
dme-mir-978 X: 19455269-19455360 [+]

Mature sequence dme-miR-973-5p

Accession MIMAT0005489
Previous IDs dme-miR-973
Sequence

19 -  

ugguuggugguugaacuucgauuuu

 - 43

Get sequence
Deep sequencing 756 reads, 31 experiments
Evidence experimental; 454 [1]
Predicted targets

Mature sequence dme-miR-973-3p

Accession MIMAT0020870
Sequence

65 -  

ucuguucauucuccgacacaag

 - 86

Get sequence
Deep sequencing 74 reads, 15 experiments
Evidence not experimental
Predicted targets

References

1
PMID:17989254 "Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs" Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC Genome Res. 17:1850-1864(2007).