Stem-loop sequence rno-mir-883

Accession MI0006126
Description Rattus norvegicus miR-883 stem-loop
Gene family MIPF0000389; mir-883
Stem-loop 
-u  -acu             a  a          uuu 
  gc    caaugcugagaga gu gcaguuacuu   a
  ||    ||||||||||||| || ||||||||||   c
  cg    guuaugacucucu ca cgucaaugaa   u
cu  gaau             a  a          uuc
Get sequence
Genome context
Coordinates (RGSC3.4) Overlapping transcripts
X: 152829659-152829735 [-]
intergenic
Clustered miRNAs
< 10kb from rno-mir-883
rno-mir-883 X: 152829659-152829735 [-]
rno-mir-742 X: 152829269-152829345 [-]
rno-mir-743b X: 152822276-152822352 [-]
rno-mir-743a X: 152821786-152821861 [-]
Database links
  • ENTREZGENE: 100314099;Mir883

Mature sequence rno-miR-883-5p

Accession MIMAT0017294
Previous IDs rno-miR-883*
Sequence

10 -  

ugcugagagaaguagcaguuacu

 - 32

Get sequence
Evidence experimental; SOLiD [2]
Predicted targets

Mature sequence rno-miR-883-3p

Accession MIMAT0005290
Previous IDs rno-miR-883
Sequence

46 -  

uaacugcaacaucucucaguau

 - 67

Get sequence
Evidence experimental; SOLiD [2]
Predicted targets

References

1
PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
2
PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).