Stem-loop sequence rno-mir-879

Accession MI0006121
Description Rattus norvegicus miR-879 stem-loop
Gene family MIPF0000421; mir-879
Stem-loop 
--uu    a   ag      au    c        gga 
    cuag ucc  aggcuu  agcu uaagccuu   u
    |||| |||  ||||||  |||| ||||||||    
    gguc agg  uucgaa  ucgg auucggag   a
cagc    g   cu      cu    u        aaa
Get sequence
Genome context
Coordinates (RGSC3.4) Overlapping transcripts
4: 21126240-21126315 [-]
intergenic
Database links
  • ENTREZGENE: 100314261;Mir879

Mature sequence rno-miR-879-5p

Accession MIMAT0005287
Previous IDs rno-miR-879
Sequence

11 -  

agaggcuuauagcucuaagcc

 - 31

Get sequence
Evidence experimental; cloned [1], SOLiD [2]
Predicted targets

Mature sequence rno-miR-879-3p

Accession MIMAT0017291
Previous IDs rno-miR-879*
Sequence

46 -  

cuuauggcuucaagcuuucgg

 - 66

Get sequence
Evidence experimental; SOLiD [2]
Predicted targets

References

1
PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
2
PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).