Stem-loop sequence hsa-mir-551b

Accession

MI0003575

Symbol

HGNC:MIR551B

Description

Homo sapiens miR-551b stem-loop

Gene family

MIPF0000360; mir-551

Stem-loop

agaugugc    c     ca          cg     - -aga    gug 
        ucuc uggcc  ugaaaucaag  ugggu g    ccug   c
        |||| |||||  ||||||||||  ||||| |    ||||    
        agag gucgg  acuuugguuc  accca c    gggc   a
----aaua    u     ag          au     g ggaa    aag 

Deep sequencing

218 reads, 21 experiments

Genome context

• Coordinates (GRCh37.p5): chr3: 168269642-168269737 [+]
• Overlapping transcripts:

  sense

  OTTHUMT00000351387 ; C3orf50-005; intron 1

  OTTHUMT00000351387 ; C3orf50-005; intron 1

  OTTHUMT00000351387 ; EGFEM1P-005; intron 1

  OTTHUMT00000336751 ; C3orf50-001; intron 4

  OTTHUMT00000336751 ; C3orf50-001; intron 4

  OTTHUMT00000336751 ; EGFEM1P-001; intron 4

  ENST00000506760 ; EGFEM1P-005; intron 1

  ENST00000506760 ; EGFEM1P-005; intron 1

  ENST00000506760 ; EGFEM1P-005; intron 1

  ENST00000431685 ; EGFEM1P-001; intron 4

  ENST00000431685 ; EGFEM1P-001; intron 4

  ENST00000431685 ; EGFEM1P-001; intron 4

Database links

• ENTREZGENE: 693136;MIR551B
• HGNC: 32807;MIR551B

Mature sequence hsa-miR-551b-5p

• Accession: MIMAT0004794
• Previous IDs: hsa-miR-551b*
• Sequence: 22 - gaaaucaagcgugggugagacc - 43
• Deep sequencing: 31 reads, 6 experiments
• Evidence: experimental; cloned [2]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-551b-5p
  • MICRORNA.ORG:hsa-miR-551b-5p
  • MIRDB:hsa-miR-551b-5p
  • RNA22-HSA:hsa-miR-551b-5p
  • TARGETMINER:hsa-miR-551b-5p

Mature sequence hsa-miR-551b-3p

• Accession: MIMAT0003233
• Previous IDs: hsa-miR-551b
• Sequence: 61 - gcgacccauacuugguuucag - 81
• Deep sequencing: 186 reads, 20 experiments
• Evidence: experimental; Microarray [1], RT-PCR [1], SAGE [1], cloned [2]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-551b-3p
  • MICRORNA.ORG:hsa-miR-551b-3p
  • MIRDB:hsa-miR-551b-3p
  • RNA22-HSA:hsa-miR-551b-3p
  • TARGETMINER:hsa-miR-551b-3p
  • TARGETSCAN-VERT:hsa-miR-551b

References

1. PMID:16505370 "The colorectal microRNAome" Cummins JM, He Y, Leary RJ, Pagliarini R, Diaz LA Jr, Sjoblom T, Barad O, Bentwich Z, Szafranska AE, Labourier E, Raymond CK, Roberts BS, Juhl H, Kinzler KW, Vogelstein B, Velculescu VE Proc Natl Acad Sci U S A. 103:3687-3692(2006).
2. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).