Stem-loop sequence mmu-mir-455

Accession

MI0004679

Symbol

MGI:Mir455

Description

Mus musculus miR-455 stem-loop

Gene family

MIPF0000129; mir-455

Stem-loop

cucccu  u ug  c          u      a   c   aa 
      gg g  ag guaugugccu uggacu cau gug  c
      || |  || |||||||||| |||||| ||| |||  g
      cu c  uc cauauacggg accuga gua cac  c
-----a  c gu  a          c      c   c   ga 

Deep sequencing

41813 reads, 94 experiments

Genome context

• Coordinates (GRCm38): chr4: 63256851-63256932 [+]
• Overlapping transcripts:

  sense

  OTTMUST00000054416 ; Col27a1-004; intron 7

  OTTMUST00000000701 ; Col27a1-001; intron 10

  OTTMUST00000054415 ; Col27a1-003; intron 10

  OTTMUST00000000702 ; Col27a1-002; intron 10

  ENSMUST00000156519 ; Col27a1-004; intron 7

  ENSMUST00000036300 ; Col27a1-001; intron 10

  ENSMUST00000148751 ; Col27a1-003; intron 10

  ENSMUST00000125504 ; Col27a1-002; intron 10

Database links

• ENTREZGENE: 735262;Mir455
• MGI: 3629649;Mir455

Mature sequence mmu-miR-455-5p

• Accession: MIMAT0003485
• Previous IDs: mmu-miR-455;mmu-miR-455-5p;mmu-miR-455*
• Sequence: 17 - uaugugccuuuggacuacaucg - 38
• Deep sequencing: 5444 reads, 76 experiments
• Evidence: experimental; MPSS [1], miRAP-cloned [2], Solexa [4-5]
• Predicted targets:
  • DIANA-MICROT:mmu-miR-455-5p
  • MICRORNA.ORG:mmu-miR-455-5p
  • MIRDB:mmu-miR-455-5p
  • RNA22-MMU:mmu-miR-455-5p

Mature sequence mmu-miR-455-3p

• Accession: MIMAT0003742
• Previous IDs: mmu-miR-455-3p;mmu-miR-455
• Sequence: 54 - gcaguccacgggcauauacac - 74
• Deep sequencing: 14716 reads, 78 experiments
• Evidence: experimental; MPSS [1], miRAP-cloned [2], cloned [3], Solexa [4-5]
• Predicted targets:
  • DIANA-MICROT:mmu-miR-455-3p
  • MICRORNA.ORG:mmu-miR-455-3p
  • MIRDB:mmu-miR-455-3p
  • RNA22-MMU:mmu-miR-455-3p
  • TARGETSCAN-VERT:mmu-miR-455

References

1. PMID:16582102 "The expression profile of microRNAs in mouse embryos" Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K, Mirochnitchenko O, Inouye M, Kato I Nucleic Acids Res. 34:1765-1771(2006).
2. PMID:16973894 "Mouse microRNA profiles determined with a new and sensitive cloning method" Takada S, Berezikov E, Yamashita Y, Lagos-Quintana M, Kloosterman WP, Enomoto M, Hatanaka H, Fujiwara S, Watanabe H, Soda M, Choi YL, Plasterk RH, Cuppen E, Mano H Nucleic Acids Res. 34:e115(2006).
3. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
4. PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
5. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).