Stem-loop sequence rno-mir-412

Accession MI0003488
Description Rattus norvegicus miR-412 stem-loop
Gene family MIPF0000192; mir-412
Stem-loop 
-gg     a    c      c   aa    -    u 
   gacgg uggu gaccag ugg  agua auug u
   ||||| |||| |||||| |||  |||| ||||  
   cugcc auca cugguc acu  ucau uaau u
ugg     g    c      c   --    g    c
Get sequence
Genome context
Coordinates (RGSC3.4) Overlapping transcripts
6: 134424656-134424725 [+]
sense
ENSRNOT00000053613 ; Mir412; exon 1
ENSRNOT00000053613 ; Mir412; exon 1
ENSRNOT00000053613 ; Mir412; exon 1
Clustered miRNAs
< 10kb from rno-mir-412
rno-mir-3592 6: 134415246-134415361 [-]
rno-mir-382 6: 134415263-134415342 [+]
rno-mir-134 6: 134415632-134415704 [+]
rno-mir-668 6: 134416226-134416293 [+]
rno-mir-485 6: 134416384-134416462 [+]
rno-mir-154 6: 134419671-134419754 [+]
rno-mir-496 6: 134420368-134420446 [+]
rno-mir-377 6: 134421775-134421846 [+]
rno-mir-541 6: 134423740-134423829 [+]
rno-mir-409b 6: 134424503-134424582 [-]
rno-mir-409a 6: 134424504-134424580 [+]
rno-mir-412 6: 134424656-134424725 [+]
rno-mir-3578 6: 134424757-134424873 [-]
rno-mir-369 6: 134424778-134424856 [+]
rno-mir-410 6: 134425082-134425157 [+]
rno-mir-3072 6: 134429885-134429995 [+]
Database links
  • ENTREZGENE: 100314076;Mir412

Mature sequence rno-miR-412-5p

Accession MIMAT0017204
Previous IDs rno-miR-412*
Sequence

9 -  

uggucgaccagcuggaaagu

 - 28

Get sequence
Evidence experimental; SOLiD [2]
Predicted targets

Mature sequence rno-miR-412-3p

Accession MIMAT0003124
Previous IDs rno-miR-412
Sequence

45 -  

cuucaccugguccacuagccgu

 - 66

Get sequence
Evidence experimental; SOLiD [2]
Predicted targets

References

1
PMID:16274478 "Identification of clustered microRNAs using an ab initio prediction method" Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T, van Nimwegen E, Zavolan M BMC Bioinformatics. 6:267(2005).
2
PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).