Stem-loop sequence hsa-mir-518f

Accession MI0003154
Symbol HGNC:MIR518F
Description Homo sapiens miR-518f stem-loop
Gene family MIPF0000020; mir-515
Stem-loop 
     ugcu    c               a     ---    gu 
ucuca    guga ccucuagagggaagc cuuuc   ucuu  c
|||||    |||| ||||||||||||||| |||||   ||||   
agagu    cauu ggagauuucucuucg gaaag   agaa  u
     uucu    a               c     aaa    aa
Get sequence
Deep sequencing
18 reads, 6 experiments
Comments

The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies [2]. The 5' end of the miRNA may be offset with respect to previous annotations.

Genome context
Coordinates (GRCh37.p5) Overlapping transcripts
chr19: 54203269-54203355 [+]
intergenic
Clustered miRNAs
< 10kb from hsa-mir-518f
hsa-mir-520a chr19: 54194135-54194219 [+]
hsa-mir-526b chr19: 54197647-54197729 [+]
hsa-mir-519b chr19: 54198467-54198547 [+]
hsa-mir-525 chr19: 54200787-54200871 [+]
hsa-mir-523 chr19: 54201639-54201725 [+]
hsa-mir-518f chr19: 54203269-54203355 [+]
hsa-mir-520b chr19: 54204481-54204541 [+]
hsa-mir-518b chr19: 54205991-54206073 [+]
hsa-mir-526a-1 chr19: 54209506-54209590 [+]
hsa-mir-520c chr19: 54210707-54210793 [+]
hsa-mir-518c chr19: 54211989-54212089 [+]
Database links

Mature sequence hsa-miR-518f-5p

Accession MIMAT0002841
Previous IDs hsa-miR-518f*
Sequence

16 -  

cucuagagggaagcacuuucuc

 - 37

Get sequence
Deep sequencing 12 reads, 3 experiments
Evidence experimental; array-cloned [1], cloned [2]
Predicted targets

Mature sequence hsa-miR-518f-3p

Accession MIMAT0002842
Previous IDs hsa-miR-518f
Sequence

53 -  

gaaagcgcuucucuuuagagg

 - 73

Get sequence
Deep sequencing 6 reads, 4 experiments
Evidence experimental; array-cloned [1], cloned [2]
Predicted targets

References

1
PMID:15965474 "Identification of hundreds of conserved and nonconserved human microRNAs" Bentwich I, Avniel A, Karov Y, Aharonov R, Gilad S, Barad O, Barzilai A, Einat P, Einav U, Meiri E, Sharon E, Spector Y, Bentwich Z Nat Genet. 37:766-770(2005).
2
PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).