Stem-loop sequence rno-mir-431

Accession MI0001722
Description Rattus norvegicus miR-431 stem-loop
Gene family MIPF0000142; mir-431
Stem-loop 
-----------------------  c    ---c          gu u     aggccgucaugcaggc 
                       uc ugcg    guccugcgag  g cuugc                c
                       || ||||    ||||||||||  | |||||                 
                       ag acgc    cgggacguuc  c ggacg                a
gcagcaaccgcuacuucuacagc  a    ucuu          ug u     uugcaauggcagucac
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Genome context
Coordinates (RGSC3.4) Overlapping transcripts
6: 134182307-134182420 [+]
intergenic
Clustered miRNAs
< 10kb from rno-mir-431
rno-mir-337 6: 134176751-134176847 [+]
rno-mir-3544 6: 134176763-134176850 [-]
rno-mir-540 6: 134177033-134177116 [+]
rno-mir-665 6: 134177288-134177381 [+]
rno-mir-431 6: 134182307-134182420 [+]
rno-mir-433 6: 134183216-134183308 [+]
rno-mir-127 6: 134184312-134184408 [+]
rno-mir-3543 6: 134186227-134186341 [-]
rno-mir-434 6: 134186260-134186340 [+]
rno-mir-136 6: 134186977-134187058 [+]
Database links
  • ENTREZGENE: 100314165;Mir431

Mature sequence rno-miR-431

Accession MIMAT0001626
Sequence

20 -  

ugucuugcaggccgucaugca

 - 40

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Evidence experimental; cloned [2], SOLiD [3]
Predicted targets

References

1
PMID:15891114 "Clustering and conservation patterns of human microRNAs" Altuvia Y, Landgraf P, Lithwick G, Elefant N, Pfeffer S, Aravin A, Brownstein MJ, Tuschl T, Margalit H Nucleic Acids Res. 33:2697-2706(2005).
2
PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
3
PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).