Stem-loop sequence cel-mir-238

Accession MI0000313
Description Caenorhabditis elegans miR-238 stem-loop
Gene family MIPF0000862; mir-238
Stem-loop 
----u   cau              uuc     c  u        cau    c 
     cuc   ugacuguuuggaug   ucgga gu caaagcua   ccaa a
     |||   ||||||||||||||   ||||| || ||||||||   ||||  
     gag   auugauagacuuac   agccu ca guuucgau   gguu a
guacc   --u              cgu     -  u        ---    a
Get sequence
Deep sequencing
3047 reads, 6 experiments
Genome context
Coordinates (WBcel215) Overlapping transcripts
III: 8867247-8867344 [-]
intergenic
Clustered miRNAs
< 10kb from cel-mir-238
cel-mir-90 III: 8873906-8874003 [-]
cel-mir-238 III: 8867247-8867344 [-]
cel-mir-80 III: 8865189-8865286 [-]
Database links

Mature sequence cel-miR-238-5p

Accession MIMAT0015114
Previous IDs cel-miR-238*
Sequence

16 -  

uggauguucucggacguucaaagc

 - 39

Get sequence
Deep sequencing 470 reads, 5 experiments
Evidence experimental; CLIPseq [5]
Predicted targets

Mature sequence cel-miR-238-3p

Accession MIMAT0000293
Previous IDs cel-miR-238
Sequence

61 -  

uuuguacuccgaugccauucaga

 - 83

Get sequence
Deep sequencing 2556 reads, 6 experiments
Evidence experimental; cloned [1-3], Northern [1], Solexa [4], CLIPseq [5]
Validated targets
Predicted targets

References

1
PMID:12672692 "The microRNAs of Caenorhabditis elegans" Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB, Bartel DP Genes Dev. 17:991-1008(2003).
2
PMID:12747828 "MicroRNAs and other tiny endogenous RNAs in C. elegans" Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D Curr Biol. 13:807-818(2003).
3
PMID:17174894 "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans" Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP Cell. 127:1193-1207(2006).
4
PMID:19460142 "Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development" Kato M, de Lencastre A, Pincus Z, Slack FJ Genome Biol. 10:R54(2009).
5
PMID:20062054 "Comprehensive discovery of endogenous Argonaute binding sites in Caenorhabditis elegans" Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo GW Nat Struct Mol Biol. 17:173-179(2010).