Stem-loop sequence cel-mir-59

Accession MI0000030
Description Caenorhabditis elegans miR-59 stem-loop
Gene family MIPF0000940; mir-59
Stem-loop 
       cuagau  g            -      aa     caaaagu    g 
aguugau      au acaucguccuga aaacga  cggaa       ucaa a
|||||||      || |||||||||||| ||||||  |||||       ||||  
ucaacua      ua uguaguaggacu uuugcu  gcuuu       aguu u
       --aaau  g            a      aa     -------    a
Get sequence
Deep sequencing
648 reads, 6 experiments
Genome context
Coordinates (WBcel215) Overlapping transcripts
IV: 11309132-11309231 [-]
intergenic
Database links

Mature sequence cel-miR-59-5p

Accession MIMAT0015101
Previous IDs cel-miR-59*
Sequence

20 -  

ucguccugaaaacgaaacggaa

 - 41

Get sequence
Evidence experimental; CLIPseq [5]
Predicted targets

Mature sequence cel-miR-59-3p

Accession MIMAT0000031
Previous IDs cel-miR-59
Sequence

63 -  

ucgaaucguuuaucaggaugaug

 - 85

Get sequence
Deep sequencing 648 reads, 6 experiments
Evidence experimental; cloned [1-3], Solexa [4], CLIPseq [5]
Validated targets
Predicted targets

References

1
PMID:11679671 "An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans" Lau NC, Lim LP, Weinstein EG, Bartel DP Science. 294:858-862(2001).
2
PMID:12672692 "The microRNAs of Caenorhabditis elegans" Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB, Bartel DP Genes Dev. 17:991-1008(2003).
3
PMID:17174894 "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans" Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP Cell. 127:1193-1207(2006).
4
PMID:19460142 "Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development" Kato M, de Lencastre A, Pincus Z, Slack FJ Genome Biol. 10:R54(2009).
5
PMID:20062054 "Comprehensive discovery of endogenous Argonaute binding sites in Caenorhabditis elegans" Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo GW Nat Struct Mol Biol. 17:173-179(2010).