Stem-loop sequence cel-mir-52

Accession MI0000023
Description Caenorhabditis elegans miR-52 stem-loop
Gene family MIPF0000160; mir-52
Stem-loop 
----       - --    a u c    gua   a   uuc    c    - ag 
    uccaacu c  uaac g c accc   cau ugu   cgug uuga c  c
    ||||||| |  |||| | | ||||   ||| |||   |||| |||| |   
    ggguuga g  auug c g uggg   gua aca   gcac aacu g  g
uucu       a uu    g c a    aaa   -   -uu    u    c aa
Get sequence
Deep sequencing
64221 reads, 6 experiments
Genome context
Coordinates (WBcel215) Overlapping transcripts
IV: 14033983-14034082 [+]
antisense
Y37A1B.335 ; Y37A1B.335; exon 1
Y37A1B.335 ; Y37A1B.335; exon 1
Y37A1B.335 ; Y37A1B.335; exon 1
Database links

Mature sequence cel-miR-52-5p

Accession MIMAT0000023
Previous IDs cel-miR-52
Sequence

17 -  

cacccguacauauguuuccgugcu

 - 40

Get sequence
Deep sequencing 63921 reads, 6 experiments
Evidence experimental; cloned [1-5], Northern [1], Solexa [6,8], CLIPseq [7]
Validated targets
Predicted targets

Mature sequence cel-miR-52-3p

Accession MIMAT0020311
Previous IDs cel-miR-52*
Sequence

58 -  

cacguuacaaugaaaggguagc

 - 79

Get sequence
Deep sequencing 300 reads, 4 experiments
Evidence experimental; Solexa [8]
Predicted targets

References

1
PMID:11679671 "An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans" Lau NC, Lim LP, Weinstein EG, Bartel DP Science. 294:858-862(2001).
2
PMID:11679672 "An extensive class of small RNAs in Caenorhabditis elegans" Lee RC, Ambros V Science. 294:862-864(2001).
3
PMID:12672692 "The microRNAs of Caenorhabditis elegans" Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB, Bartel DP Genes Dev. 17:991-1008(2003).
4
PMID:12747828 "MicroRNAs and other tiny endogenous RNAs in C. elegans" Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D Curr Biol. 13:807-818(2003).
5
PMID:17174894 "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans" Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP Cell. 127:1193-1207(2006).
6
PMID:19460142 "Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development" Kato M, de Lencastre A, Pincus Z, Slack FJ Genome Biol. 10:R54(2009).
7
PMID:20062054 "Comprehensive discovery of endogenous Argonaute binding sites in Caenorhabditis elegans" Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo GW Nat Struct Mol Biol. 17:173-179(2010).
8
PMID:21307183 "Improved annotation of C. elegans microRNAs by deep sequencing reveals structures associated with processing by Drosha and Dicer" Warf MB, Johnson WE, Bass BL RNA. 17:563-577(2011).