Stem-loop sequence cel-mir-41

Accession MI0000012
Description Caenorhabditis elegans miR-41 stem-loop
Gene family MIPF0000096; mir-36
Stem-loop 
----  g   cag      u           -    ca       auacuuc 
    gg ucc   agaccu ggugguuuuuc ucug  gugauag       u
    || |||   |||||| ||||||||||| ||||  |||||||       a
    cc agg   ucugga ccacuaaaaag gggc  cacuauc       a
uccu  g   ---      u           u    --       gcucaac
Get sequence
Deep sequencing
2171 reads, 6 experiments
Genome context
Coordinates (WBcel215) Overlapping transcripts
II: 11538244-11538340 [+]
antisense
Y62F5A.9 ; Y62F5A.9; intron 2
Y62F5A.9 ; Y62F5A.9; intron 2
Y62F5A.9 ; Y62F5A.9; intron 2
Clustered miRNAs
< 10kb from cel-mir-41
cel-mir-35 II: 11537544-11537640 [+]
cel-mir-36 II: 11537649-11537745 [+]
cel-mir-37 II: 11537769-11537866 [+]
cel-mir-38 II: 11537869-11537963 [+]
cel-mir-39 II: 11538025-11538111 [+]
cel-mir-40 II: 11538120-11538211 [+]
cel-mir-41 II: 11538244-11538340 [+]
Database links

Mature sequence cel-miR-41-5p

Accession MIMAT0020770
Sequence

17 -  

ggugguuuuucucugcagugaua

 - 39

Get sequence
Deep sequencing 39 reads, 5 experiments
Evidence experimental; Solexa [6]
Predicted targets

Mature sequence cel-miR-41-3p

Accession MIMAT0000012
Previous IDs cel-miR-41
Sequence

61 -  

ucaccgggugaaaaaucaccua

 - 82

Get sequence
Deep sequencing 2121 reads, 6 experiments
Evidence experimental; cloned [1-3], Solexa [4,6], CLIPseq [5]
Predicted targets

References

1
PMID:11679671 "An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans" Lau NC, Lim LP, Weinstein EG, Bartel DP Science. 294:858-862(2001).
2
PMID:12672692 "The microRNAs of Caenorhabditis elegans" Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB, Bartel DP Genes Dev. 17:991-1008(2003).
3
PMID:17174894 "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans" Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP Cell. 127:1193-1207(2006).
4
PMID:19460142 "Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development" Kato M, de Lencastre A, Pincus Z, Slack FJ Genome Biol. 10:R54(2009).
5
PMID:20062054 "Comprehensive discovery of endogenous Argonaute binding sites in Caenorhabditis elegans" Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo GW Nat Struct Mol Biol. 17:173-179(2010).
6
PMID:21307183 "Improved annotation of C. elegans microRNAs by deep sequencing reveals structures associated with processing by Drosha and Dicer" Warf MB, Johnson WE, Bass BL RNA. 17:563-577(2011).