Stem-loop sequence mdo-mir-7373f

Accession

MI0040980 (change log)

Description

Monodelphis domestica miR-7373f stem-loop

Stem-loop

   ---         u    a  a     auguugc 
5'    aagcccuuu auua ug uugag       g
      ||||||||| |||| || |||||        
3'    uuugggaaa uaau ac gacuc       a
   uua         -    c  g     cuuuuau 

Deep sequencing

1423 reads, 0 reads per million, 5 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (MonDom5; GCF_000002295.2): chrX: 44688086-44688149 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from mdo-mir-7373f

• mdo-mir-7373d: chrX: 44689543-44689601 [-]
• mdo-mir-7373c: chrX: 44688608-44688663 [-]
• mdo-mir-7373f: chrX: 44688086-44688149 [-]
• mdo-mir-7373b: chrX: 44687808-44687862 [-]
• mdo-mir-7374d: chrX: 44686439-44686494 [-]
• mdo-mir-7374b: chrX: 44682076-44682130 [-]
• mdo-mir-7374c: chrX: 44681360-44681416 [-]
• mdo-mir-7375c-2: chrX: 44679658-44679714 [-]

Database links

• miRBase Tracker:MI0040980

Mature sequence mdo-miR-7373f-5p

• Accession: MIMAT0050436
• Sequence: 1 - aagcccuuuuauuaaugauugag - 23
• Deep sequencing: 155 reads, 4 experiments
• Evidence: experimental; Illumina [1]

Mature sequence mdo-miR-7373f-3p

• Accession: MIMAT0050437
• Sequence: 42 - caggcacuaauaaaggguuuau - 63
• Deep sequencing: 1268 reads, 5 experiments
• Evidence: experimental; Illumina [1]

References

1. PMID:29079676 "Sex-biased microRNA expression in mammals and birds reveals underlying regulatory mechanisms and a role in dosage compensation" Warnefors M, Mossinger K, Halbert J, Studer T, VandeBerg JL, Lindgren I, Fallahshahroudi A, Jensen P, Kaessmann H Genome Res. [Epub prior to print](2017).