Stem-loop sequence mdo-mir-7375e

Accession

MI0040976 (change log)

Description

Monodelphis domestica miR-7375e stem-loop

Stem-loop

   --uagc    a      caa       ua 
5'       ccuu ccccac   uuaauag  u
         |||| ||||||   |||||||  u
3'       ggaa ggggug   gauuguc  a
   cgucau    g      --a       uu 

Deep sequencing

283 reads, 0 reads per million, 3 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (MonDom5; GCF_000002295.2): chrX: 44675952-44676008 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from mdo-mir-7375e

• mdo-mir-7374b: chrX: 44682076-44682130 [-]
• mdo-mir-7374c: chrX: 44681360-44681416 [-]
• mdo-mir-7375c-2: chrX: 44679658-44679714 [-]
• mdo-mir-7375d: chrX: 44676822-44676879 [-]
• mdo-mir-7375: chrX: 44676538-44676594 [-]
• mdo-mir-7375e: chrX: 44675952-44676008 [-]
• mdo-mir-7375c-3: chrX: 44674818-44674874 [-]
• mdo-mir-7375c-1: chrX: 44674536-44674592 [-]
• mdo-mir-7375c-4: chrX: 44674236-44674310 [-]
• mdo-mir-7374a: chrX: 44670461-44670515 [-]
• mdo-mir-12403: chrX: 44668666-44668723 [-]
• mdo-mir-7373e: chrX: 44667557-44667611 [-]
• mdo-mir-7373a-2: chrX: 44666176-44666233 [-]

Database links

• miRBase Tracker:MI0040976

Mature sequence mdo-miR-7375e-5p

• Accession: MIMAT0050430
• Sequence: 1 - uagcccuuaccccaccaauuaau - 23
• Deep sequencing: 32 reads, 2 experiments
• Evidence: experimental; Illumina [1]

Mature sequence mdo-miR-7375e-3p

• Accession: MIMAT0050431
• Sequence: 37 - uagagugggggaagguacugc - 57
• Deep sequencing: 246 reads, 3 experiments
• Evidence: experimental; Illumina [1]

References

1. PMID:29079676 "Sex-biased microRNA expression in mammals and birds reveals underlying regulatory mechanisms and a role in dosage compensation" Warnefors M, Mossinger K, Halbert J, Studer T, VandeBerg JL, Lindgren I, Fallahshahroudi A, Jensen P, Kaessmann H Genome Res. [Epub prior to print](2017).