Stem-loop sequence cel-mir-58c

Accession

MI0039738 (change log)

Description

Caenorhabditis elegans miR-58c stem-loop

Literature search

19 open access papers mention cel-mir-58c
(215 sentences)

Stem-loop

   a      --a   c         g        c  -   a 
5'  uauuca   uug aaccuguug uugaucuc ua cca a
    ||||||   ||| ||||||||| |||||||| || ||| u
3'  auaagu   aac uuggauaac gacuagag au ggu a
   a      gaa   -         g        a  a   a 

Deep sequencing

264 reads, 0 reads per million, 16 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (WBcel235; GCA_000002985.3): chrIV: 6660634-6660712 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from cel-mir-58c

• cel-mir-58c: chrIV: 6660634-6660712 [-]
• cel-mir-58b: chrIV: 6660461-6660519 [-]

Database links

• miRBase Tracker:MI0039738

Mature sequence cel-miR-58c

• Accession: MIMAT0049030
• Sequence: 48 - agagaucaggcaauagguucaaa - 70
• Deep sequencing: 262 reads, 16 experiments
• Evidence: experimental; Illumina [1]

References

1. PMID:28645154 "ALG-5 is a miRNA-associated Argonaute required for proper developmental timing in the Caenorhabditis elegans germline" Brown KC, Svendsen JM, Tucci RM, Montgomery BE, Montgomery TA Nucleic Acids Res. 45:9093-9107(2017).