Stem-loop sequence dre-mir-181a-3

Accession

MI0039512 (change log)

Description

Danio rerio miR-181a-3 stem-loop

Literature search

18 open access papers mention dre-mir-181a-3
(68 sentences)

Stem-loop

   g    ucu   a a           ug      a    gcaa 
5'  cgag   cag g acauucaacgc  ucggug guuu    g
    ||||   ||| | |||||||||||  |||||| ||||    u
3'  gcuc   guc c ugugaguugug  agcuac caaa    g
   a    ucc   c a           --      -    aaga 

Deep sequencing

919294 reads, 5.89e+04 reads per million, 11 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (GRCz11; GCA_000002035.4): chr3: 34197447-34197530 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from dre-mir-181a-3

• dre-mir-181a-3: chr3: 34197447-34197530 [+]
• dre-mir-181c: chr3: 34197694-34197771 [+]

Database links

• miRBase Tracker:MI0039512

Mature sequence dre-miR-181a-5p

• Accession: MIMAT0001623
• Previous IDs: dre-miR-181a
• Sequence: 14 - aacauucaacgcugucggugagu - 36
• Deep sequencing: 4592586 reads, 11 experiments
• Evidence: by similarity; MI0001380

Mature sequence dre-miR-181a-3-3p

• Accession: MIMAT0048654
• Sequence: 52 - accaucgaguguugaguguacc - 73
• Deep sequencing: 831 reads, 11 experiments
• Evidence: not experimental

References

1. PMID:26473382 "A Uniform System for the Annotation of Vertebrate microRNA Genes and the Evolution of the Human microRNAome" Fromm B, Billipp T, Peck LE, Johansen M, Tarver JE, King BL, Newcomb JM, Sempere LF, Flatmark K, Hovig E, Peterson KJ Annu Rev Genet. 49:213-242(2015).