Stem-loop sequence ocu-mir-221

Accession

MI0039357 (change log)

Description

Oryctolagus cuniculus miR-221 stem-loop

Literature search

2 open access papers mention ocu-mir-221
(3 sentences)

Stem-loop

   ---   ug   u         auuu    -   u 
5'    acc  gca acaauguag    cugu guu u
      |||  ||| |||||||||    |||| ||| u
3'    ugg  cgu uguuacauc    gaca cgg u
   cuu   gu   c         ----    a   g 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (OryCun2.0; GCA_000003625.1): CM000811.1: 30972910-30972972 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from ocu-mir-221

• ocu-mir-222: CM000811.1: 30973574-30973637 [-]
• ocu-mir-221: CM000811.1: 30972910-30972972 [-]

Database links

• miRBase Tracker:MI0039357

Mature sequence ocu-miR-221-5p

• Accession: MIMAT0048354
• Sequence: 1 - accuggcauacaauguagauuucugu - 26
• Evidence: experimental; Illumina [1]

Mature sequence ocu-miR-221-3p

• Accession: MIMAT0048355
• Sequence: 41 - agcuacauugucugcuggguuuc - 63
• Evidence: experimental; Illumina [1]

References

1. PMID:26733575 "The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference" Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D Genome Biol Evol. 8:330-344(2016).