Stem-loop sequence ocu-mir-106a

Accession

MI0039272 (change log)

Description

Oryctolagus cuniculus miR-106a stem-loop

Stem-loop

   ---aa       ua  g     g   c  u 
5'      aagugcu  ca ugcag uag uu u
        |||||||  || ||||| ||| || u
3'      uucacga  gu acguc auc ag g
   cauuc       gc  a     -   u  a 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (OryCun2.0; GCA_000003625.1): CM000811.1: 108519035-108519093 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from ocu-mir-106a

• ocu-mir-106a: CM000811.1: 108519035-108519093 [-]
• ocu-mir-18b: CM000811.1: 108518869-108518933 [-]
• ocu-mir-20b: CM000811.1: 108518633-108518692 [-]
• ocu-mir-19b-2: CM000811.1: 108518503-108518568 [-]
• ocu-mir-92a-2: CM000811.1: 108518367-108518428 [-]
• ocu-mir-363: CM000811.1: 108518210-108518274 [-]

Database links

• miRBase Tracker:MI0039272

Mature sequence ocu-miR-106a-5p

• Accession: MIMAT0048195
• Sequence: 1 - aaaagugcuuacagugcagguag - 23
• Evidence: experimental; Illumina [1]

Mature sequence ocu-miR-106a-3p

• Accession: MIMAT0048196
• Sequence: 37 - acugcaaugcgagcacuucuuac - 59
• Evidence: experimental; Illumina [1]

References

1. PMID:26733575 "The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference" Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D Genome Biol Evol. 8:330-344(2016).