Stem-loop sequence ocu-mir-19b-1

AccessionMI0039229 (change log)
DescriptionOryctolagus cuniculus miR-19b-1 stem-loop
Literature search

1 open access papers mention ocu-mir-19b-1
(1 sentences)

Stem-loop
   --         -  -      uc    ugugu 
5'   aguuuugca gg uuugca  cagc     g
     ||||||||| || ||||||  ||||     a
3'   ucaaaacgu cc aaacgu  gucg     u
   ag         a  u      --    ucuua 
Get sequence
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (OryCun2.0; GCA_000003625.1) Overlapping transcripts
CM000797.1: 93068307-93068367 [+]
intergenic
Clustered miRNAs
< 10kb from ocu-mir-19b-1
ocu-mir-17CM000797.1: 93067701-93067759 [+]
ocu-mir-18aCM000797.1: 93067839-93067903 [+]
ocu-mir-19aCM000797.1: 93067987-93068044 [+]
ocu-mir-20aCM000797.1: 93068174-93068232 [+]
ocu-mir-19b-1CM000797.1: 93068307-93068367 [+]
ocu-mir-92a-1CM000797.1: 93068424-93068482 [+]
Database links

Mature sequence ocu-miR-19b-5p

Accession MIMAT0048117
Sequence

1 - 

aguuuugcagguuugcauccagc

 - 23

Get sequence
Evidence experimental; Illumina [1]

Mature sequence ocu-miR-19b-3p

Accession MIMAT0048118
Sequence

39 - 

ugugcaaauccaugcaaaacuga

 - 61

Get sequence
Evidence experimental; Illumina [1]

References

1
PMID:26733575 "The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference" Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D Genome Biol Evol. 8:330-344(2016).