Stem-loop sequence cpo-mir-1a

AccessionMI0038552 (change log)
DescriptionCavia porcellus miR-1a stem-loop
Stem-loop
   --                ac     ugaaca 
5'   acauacuucuuuaugu  ccaua      u
     ||||||||||||||||  |||||       
3'   uguaugaagaaaugua  gguau      a
   ua                -a     cguaac 
Get sequence
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (cavPor3; GCA_000151735.1) Overlapping transcripts
DS562869.1: 40571811-40571871 [+]
intergenic
Clustered miRNAs
< 10kb from cpo-mir-1a
cpo-mir-1aDS562869.1: 40571811-40571871 [+]
cpo-mir-133a-2DS562869.1: 40575096-40575155 [+]
Database links

Mature sequence cpo-miR-1a-5p

Accession MIMAT0046837
Sequence

1 - 

acauacuucuuuauguacccaua

 - 23

Get sequence
Evidence experimental; Illumina [1]

Mature sequence cpo-miR-1a-3p

Accession MIMAT0046838
Sequence

40 - 

uggaauguaaagaaguauguau

 - 61

Get sequence
Evidence experimental; Illumina [1]

References

1
PMID:26733575 "The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference" Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D Genome Biol Evol. 8:330-344(2016).