Stem-loop sequence tca-mir-11626b

Accession

MI0037393 (change log)

Description

Tribolium castaneum miR-11626b stem-loop

Stem-loop

   aauuu           g g   a      uu          uc ca     ca 
5'      ugguuuuguuu u ggc ugauug  uuagcucaug  u  ugauu  u
        ||||||||||| | ||| ||||||  ||||||||||  |  |||||   
3'      accaagacaaa g ccg acuaac  aguugaguac  a  guuag  g
   cuucc           g a   g      -u          ga ag     ua 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Tcas4.0): ChLG6: 8825341-8825447 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from tca-mir-11626b

• tca-mir-3851d-1: ChLG6: 8819480-8819570 [-]
• tca-mir-11624b-1: ChLG6: 8819743-8819834 [-]
• tca-mir-11626b: ChLG6: 8825341-8825447 [+]
• tca-mir-11624c: ChLG6: 8825488-8825579 [+]
• tca-mir-3851c: ChLG6: 8825723-8825833 [+]
• tca-mir-3851g-3: ChLG6: 8825859-8825916 [+]

Database links

• miRBase Tracker:MI0037393

Mature sequence tca-miR-11626b-5p

• Accession: MIMAT0045542
• Sequence: 20 - ggcaugauuguuuuagcucaug - 41
• Evidence: experimental; Illumina [1]

Mature sequence tca-miR-11626b-3p

• Accession: MIMAT0045543
• Sequence: 70 - ugaguugaucaaucaggccagg - 91
• Evidence: experimental; Illumina [1]

References

1. PMID:26518483 "MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum" Ninova M, Ronshaugen M, Griffiths-Jones S Genome Res. 26:85-96(2016).