Stem-loop sequence tca-mir-3851n-1

AccessionMI0037356 (change log)
DescriptionTribolium castaneum miR-3851n-1 stem-loop
Stem-loop
   auuuu     --      ag             ca a  a        u   au 
5'      ugagu  aaauuu  uacuggguuggca  g gu guacugug aaa  u
        |||||  ||||||  |||||||||||||  | || |||||||| |||   
3'      acuua  uuuaaa  augauccggccgu  c ca caugauac uuu  c
   cgacc     ac      ga             ac -  g        -   au 
Get sequence
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (Tcas4.0) Overlapping transcripts
ChLG2: 1361328-1361433 [-]
intergenic
Clustered miRNAs
< 10kb from tca-mir-3851n-1
tca-mir-11617a-2ChLG2: 1365773-1365865 [+]
tca-mir-11619a-3ChLG2: 1365639-1365725 [+]
tca-mir-3836aChLG2: 1365524-1365614 [+]
tca-mir-11617d-1ChLG2: 1363611-1363670 [+]
tca-mir-11621ChLG2: 1363442-1363536 [+]
tca-mir-11619bChLG2: 1363053-1363144 [+]
tca-mir-3851k-2ChLG2: 1362341-1362432 [+]
tca-mir-3851n-1ChLG2: 1361328-1361433 [-]
tca-mir-3836c-1ChLG2: 1355772-1355863 [-]
tca-mir-11619dChLG2: 1355663-1355755 [-]
tca-mir-11617cChLG2: 1355378-1355472 [-]
Database links

Mature sequence tca-miR-3851n-5p

Accession MIMAT0045482
Sequence

24 - 

gguuggcacagaguaguacugug

 - 46

Get sequence
Evidence experimental; Illumina [1]

Mature sequence tca-miR-3851n-3p

Accession MIMAT0045483
Sequence

62 - 

uaguacgacccaugccggccua

 - 83

Get sequence
Evidence experimental; Illumina [1]

References

1
PMID:26518483 "MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum" Ninova M, Ronshaugen M, Griffiths-Jones S Genome Res. 26:85-96(2016).