Stem-loop sequence sly-MIR827

AccessionMI0033684 (change log)
DescriptionSolanum lycopersicum miR827 stem-loop
Literature search

5 open access papers mention sly-MIR827
(12 sentences)

Stem-loop 
   --auu            g       u   ucauaucauu       guuuu  g 
5'      uguuuguugaug ucaucua uca          uggcaua     ug a
        |||||||||||| ||||||| |||          |||||||     ||  
3'      acaaacaacuac aguagau agu          accguau     ac a
   cuucu            a       u   ----------       -aauu  c
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Confidence Annotation confidence: not enough data
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Genome context
Coordinates (SL2.50; GCA_000188115.2) Overlapping transcripts
chr12: 65453531-65453627 [+]
intergenic
Database links

Mature sequence sly-miR827

Accession MIMAT0042010
Sequence

72 -  

uuagaugaacaucaacaaaca

 - 92

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Evidence experimental; Illumina [1]

References

1
PMID:25218481 "Prediction and characterization of Tomato leaf curl New Delhi virus (ToLCNDV) responsive novel microRNAs in Solanum lycopersicum" Pradhan B, Naqvi AR, Saraf S, Mukherjee SK, Dey N Virus Res. 195:183-195(2015).