Stem-loop sequence hsa-mir-10401

Accession

MI0033425 (change log)

Description

Homo sapiens miR-10401 stem-loop

Stem-loop

   ---  u      a    ug    g   a c 
5'    cg guggga ggcg  gggu cgg c c
      || |||||| ||||  |||| ||| |  
3'    gc cgcccu ccgc  ucca gcc g c
   gcc  c      g    --    -   c g 

Deep sequencing

1325 reads, 156 reads per million, 144 experiments

Confidence

Annotation confidence: low

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Genome context

Coordinates (GRCh38; GCA_000001405.15)	Overlapping transcripts
chr21: 8206563-8206618 [+]	intergenic
chr21: 8250772-8250827 [+]	intergenic
chr21: 8389610-8389665 [+]	intergenic
chr21: 8433797-8433852 [+]	intergenic

Clustered miRNAs

< 10kb from hsa-mir-10401

• hsa-mir-6724-1: chr21: 8205315-8205406 [+]
• hsa-mir-10401: chr21: 8206563-8206618 [+]
• hsa-mir-3648-1: chr21: 8208473-8208652 [+]
• hsa-mir-10401: chr21: 8250772-8250827 [+]
• hsa-mir-10401: chr21: 8389610-8389665 [+]
• hsa-mir-10401: chr21: 8433797-8433852 [+]

Database links

• miRBase Tracker:MI0033425

Mature sequence hsa-miR-10401-5p

• Accession: MIMAT0041633
• Sequence: 1 - cgugugggaaggcguggggu - 20
• Deep sequencing: 118 reads, 53 experiments
• Evidence: experimental; Illumina [1]

Mature sequence hsa-miR-10401-3p

• Accession: MIMAT0041634
• Sequence: 36 - accucgccgucccgcccgccg - 56
• Deep sequencing: 933 reads, 116 experiments
• Evidence: experimental; Illumina [1]

References

1. PMID:25723320 "Comprehensive miRNA sequence analysis reveals survival differences in diffuse large B-cell lymphoma patients" Lim EL, Trinh DL, Scott DW, Chu A, Krzywinski M, Zhao Y, Robertson AG, Mungall AJ, Schein J, Boyle M, Mottok A, Ennishi D, Johnson NA, Steidl C, Connors JM, Morin RD, Gascoyne RD, Marra MA Genome Biol. 16:18(2015).