Stem-loop sequence bra-MIR2111

Accession

MI0030576 (change log)

Description

Brassica rapa miR2111 stem-loop

Gene family

MIPF0000754; MIR2111

Literature search

4 open access papers mention bra-MIR2111
(6 sentences)

Stem-loop

   -uauug       cc                          -   ----   g          a      g 
5'       gugagga  ggguaaucugcauccugggguuuaag guu    uaa uacacgcaaa auaugc u
         |||||||  |||||||||||||||||||||||||| |||    ||| |||||||||| ||||||  
3'       cauuccu  uccauuaggcguaggacuccagauuu cga    auu guguguguuu uauacg a
   gcauaa       uc                          u   uaug   -          a      c 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Brapa_1.1; GCA_000309985.1): chrA1: 27648068-27648204 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0030576

Mature sequence bra-miR2111-5p

• Accession: MIMAT0035874
• Sequence: 18 - uaaucugcauccugggguuua - 38
• Evidence: experimental; Illumina [1]

Mature sequence bra-miR2111-3p

• Accession: MIMAT0035875
• Sequence: 101 - gaccucaggaugcggauuacc - 121
• Evidence: experimental; Illumina [1]

References

1. PMID:24559317 "Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis" Jiang J, Lv M, Liang Y, Ma Z, Cao J BMC Genomics. 15:146(2014).