Stem-loop sequence bra-MIR395a

Accession

MI0030564 (change log)

Description

Brassica rapa miR395a stem-loop

Gene family

MIPF0000016; MIR395

Literature search

6 open access papers mention bra-MIR395a
(16 sentences)

Stem-loop

      uc   ua         ug         u      uacaa    u 
5' aug  ucc  gaguuccuc  agcacuuca ugggua     uuuc u
   |||  |||  |||||||||  ||||||||| ||||||     ||||  
3' uac  agg  cucaagggg  uugugaagu acccau     gaag a
      cc   uc         gu         c      ---ua    u 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Brapa_1.1; GCA_000309985.1): chrA8: 17814983-17815075 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0030564

Mature sequence bra-miR395a-5p

• Accession: MIMAT0035850
• Sequence: 13 - guuccucugagcacuucauug - 33
• Evidence: experimental; Illumina [1]

Mature sequence bra-miR395a-3p

• Accession: MIMAT0035851
• Sequence: 63 - cugaaguguuugggggaacuc - 83
• Evidence: experimental; Illumina [1]

References

1. PMID:24559317 "Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis" Jiang J, Lv M, Liang Y, Ma Z, Cao J BMC Genomics. 15:146(2014).