Stem-loop sequence bra-MIR395c

Accession

MI0030563 (change log)

Description

Brassica rapa miR395c stem-loop

Gene family

MIPF0000016; MIR395

Literature search

6 open access papers mention bra-MIR395c
(14 sentences)

Stem-loop

   gu      uu   ua         ug         u    uaua      uuucua 
5'   cggaug  ucc  gaguuccuc  agcacuuca ugga    acauuu      u
     ||||||  |||  |||||||||  ||||||||| ||||    ||||||       
3'   gcuuac  agg  cucaagggg  uugugaagu accu    uguaaa      c
   --      uc   uc         gu         c    --ua      uuaaaa 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Brapa_1.1; GCA_000309985.1): chrA7: 18568920-18569029 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from bra-MIR395c

• bra-MIR395c: chrA7: 18568920-18569029 [-]
• bra-MIR395b: chrA7: 18563029-18563122 [-]

Database links

• miRBase Tracker:MI0030563

Mature sequence bra-miR395c-5p

• Accession: MIMAT0035848
• Sequence: 18 - guuccucugagcacuucauug - 38
• Evidence: experimental; Illumina [1]

Mature sequence bra-miR395c-3p

• Accession: MIMAT0035849
• Sequence: 77 - cugaaguguuugggggaacuc - 97
• Evidence: experimental; Illumina [1]

References

1. PMID:24559317 "Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis" Jiang J, Lv M, Liang Y, Ma Z, Cao J BMC Genomics. 15:146(2014).