Stem-loop sequence bra-MIR395b

Accession

MI0030562 (change log)

Description

Brassica rapa miR395b stem-loop

Gene family

MIPF0000016; MIR395

Literature search

7 open access papers mention bra-MIR395b
(16 sentences)

Stem-loop

   auguu   ua         ug         u     a   c    auuu 
5'      ucc  gaguuccuc  agcacuuca uggag uac auuu    u
        |||  |||||||||  ||||||||| ||||| ||| ||||    c
3'      agg  cucaagggg  uugugaagu accuu aug uaaa    u
   -----   uc         gu         c     -   -    acua 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Brapa_1.1; GCA_000309985.1): chrA7: 18563029-18563122 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from bra-MIR395b

• bra-MIR395c: chrA7: 18568920-18569029 [-]
• bra-MIR395b: chrA7: 18563029-18563122 [-]

Database links

• miRBase Tracker:MI0030562

Mature sequence bra-miR395b-5p

• Accession: MIMAT0035846
• Sequence: 13 - guuccucugagcacuucauug - 33
• Evidence: experimental; Illumina [1]

Mature sequence bra-miR395b-3p

• Accession: MIMAT0035847
• Sequence: 69 - cugaaguguuugggggaacuc - 89
• Evidence: experimental; Illumina [1]

References

1. PMID:24559317 "Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis" Jiang J, Lv M, Liang Y, Ma Z, Cao J BMC Genomics. 15:146(2014).