Stem-loop sequence bra-MIR168a

Accession

MI0030557 (change log)

Description

Brassica rapa miR168a stem-loop

Gene family

MIPF0000081; MIR168

Literature search

8 open access papers mention bra-MIR168a
(51 sentences)

Stem-loop

        g   c   u  c              u     a      --g   g   cc    --     c 
5' uuacg cgg cuc ga ucgcuuggugcagg cggga cugauu   gcu aca  gcca  cgugg u
   ||||| ||| ||| || |||||||||||||| ||||| ||||||   ||| |||  ||||  |||||  
3' agugc gcc gag cu agugaacuauguuc gcccu ggcuag   cga ugu  cggu  guacc u
        a   u   c  a              c     a      gga   g   -u    ug     u 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Brapa_1.1; GCA_000309985.1): chrA6: 25084101-25084233 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0030557

Mature sequence bra-miR168a-5p

• Accession: MIMAT0035836
• Sequence: 18 - ucgcuuggugcaggucgggaa - 38
• Evidence: experimental; Illumina [1]

Mature sequence bra-miR168a-3p

• Accession: MIMAT0035837
• Sequence: 98 - cccgccuuguaucaagugaau - 118
• Evidence: experimental; Illumina [1]

References

1. PMID:24559317 "Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis" Jiang J, Lv M, Liang Y, Ma Z, Cao J BMC Genomics. 15:146(2014).