Stem-loop sequence bra-MIR168b

Accession

MI0030555 (change log)

Description

Brassica rapa miR168b stem-loop

Gene family

MIPF0000081; MIR168

Literature search

8 open access papers mention bra-MIR168b
(42 sentences)

Stem-loop

   ------  -     g      c          u     -       g   -a     -   -cgu  a 
5'       cg ggcuc gauucg uuggugcagg cggga cuaauuc cug  cacag cca    gg u
         || ||||| |||||| |||||||||| ||||| ||||||| |||  ||||| |||    || u
3'       gc ccgag cuaagu aacuacguuc gcccu gguuagg gac  guguu ggu    cc u
   guggua  u     g      c          c     a       -   ga     u   uauu  u 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Brapa_1.1; GCA_000309985.1): chrA1: 5387909-5388035 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0030555

Mature sequence bra-miR168b-5p

• Accession: MIMAT0035832
• Sequence: 12 - ucgcuuggugcaggucgggac - 32
• Evidence: experimental; Illumina [1]

Mature sequence bra-miR168b-3p

• Accession: MIMAT0035833
• Sequence: 91 - cccgccuugcaucaacugaau - 111
• Evidence: experimental; Illumina [1]

References

1. PMID:24559317 "Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis" Jiang J, Lv M, Liang Y, Ma Z, Cao J BMC Genomics. 15:146(2014).