Stem-loop sequence bra-MIR156c

Accession

MI0030549 (change log)

Description

Brassica rapa miR156c stem-loop

Gene family

MIPF0000008; MIR156

Literature search

16 open access papers mention bra-MIR156c
(145 sentences)

Stem-loop

   c  aua   a        -    -         a   ---     cuu     g 
5'  gc   gaa cugacaga agag agugagcac caa   aggca   ugcau u
    ||   ||| |||||||| |||| ||||||||| |||   |||||   ||||| u
3'  cg   cuu gacugucu ucuc ucacucgug guu   uucgu   acgua c
   u  -gc   a        a    g         c   cuc     -uu     g 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Brapa_1.1; GCA_000309985.1): chrA3: 28490294-28490397 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0030549

Mature sequence bra-miR156c-5p

• Accession: MIMAT0035820
• Sequence: 12 - ugacagaagagagugagcac - 31
• Evidence: experimental; Illumina [1]

Mature sequence bra-miR156c-3p

• Accession: MIMAT0035821
• Sequence: 75 - gcucacugcucuaucugucaga - 96
• Evidence: experimental; Illumina [1]

References

1. PMID:24559317 "Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis" Jiang J, Lv M, Liang Y, Ma Z, Cao J BMC Genomics. 15:146(2014).