Stem-loop sequence bra-MIR9557

Accession

MI0029303 (change log)

Description

Brassica rapa miR9557 stem-loop

Literature search

1 open access papers mention bra-MIR9557
(1 sentences)

Stem-loop

   gccgcuuuauucuucacuuacgcaugcugucuuuacaguucacacu                                 a    gaa ug aggaacaaaaaga g       aa 
5'                                               gauuuugcguuucaacucgguccucauuucuuu uaac   g  g             u uuuucag  g
                                                 ||||||||||||||||||||||||||||||||| ||||   |  |             | |||||||  a
3'                                               cuaaaacgcaagguugagucgggaguaaagaaa auug   c  c             g agaaguu  a
   -------------------------------------------uuu                                 -    -aa gu gaaaguaagagaa g       ac 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Brapa_1.1; GCA_000309985.1): chrA7: 1046108-1046295 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0029303

Mature sequence bra-miR9557-5p

• Accession: MIMAT0035667
• Sequence: 49 - uuuugcguuucaacucggucc - 69
• Evidence: experimental; Illumina [1]

Mature sequence bra-miR9557-3p

• Accession: MIMAT0035668
• Sequence: 165 - gcugaguuggaacgcaaaauc - 185
• Evidence: experimental; Illumina [1]

References

1. PMID:24559317 "Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis" Jiang J, Lv M, Liang Y, Ma Z, Cao J BMC Genomics. 15:146(2014).