Stem-loop sequence bra-MIR9553

Accession

MI0029299 (change log)

Description

Brassica rapa miR9553 stem-loop

Literature search

1 open access papers mention bra-MIR9553
(1 sentences)

Stem-loop

   -----------------------------ggggcaaga   c           a     a    a            au    aucccauaauuagcuuauauuuugg 
5'                                       ggg aaccauguaca agcug agcu auuaugugaagu  ggua                         u
                                         ||| ||||||||||| ||||| |||| ||||||||||||  ||||                          
3'                                       ccc uugguacaugu ucgac ucga uaauacacuuca  ccgu                         a
   caugugucgcccucucuacgguuuguuucaccaucuua   -           a     c    c            gu    auauaaucuaagaucagaaucgguu 

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Brapa_1.1; GCA_000309985.1): chrA1: 7994267-7994454 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0029299

Mature sequence bra-miR9553-5p

• Accession: MIMAT0035659
• Sequence: 21 - uacaaagcugaagcuaauuaug - 42
• Evidence: experimental; Illumina [1]

Mature sequence bra-miR9553-3p

• Accession: MIMAT0035660
• Sequence: 121 - uaaucagcuccagcuauguaca - 142
• Evidence: experimental; Illumina [1]

References

1. PMID:24559317 "Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis" Jiang J, Lv M, Liang Y, Ma Z, Cao J BMC Genomics. 15:146(2014).