Stem-loop sequence eca-mir-425

Accession

MI0028397 (change log)

Description

Equus caballus miR-425 stem-loop

Gene family

MIPF0000242; mir-425

Literature search

1 open access papers mention eca-mir-425
(1 sentences)

Stem-loop

   ---   c c     g   gccu c   a g     c  u    aau        cac     uugagug   aca 
5'    guc c ggguc ugc    g ggc u gaaag gc uugg   gacacgau   ucccg       ggc   c
      ||| | ||||| |||    | ||| | ||||| || ||||   ||||||||   |||||       |||   a
3'    cgg g uccag acg    c ccg g cuuuc cg gacc   cugugcua   agggc       ccg   a
   ucc   a u     g   -acc u   c g     u  u    cgc        -ua     -----ua   aag 

Deep sequencing

1208 reads, 50 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (EquCab2.0; GCF_000002305.2): chr16: 38001590-38001732 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from eca-mir-425

• eca-mir-191b: chr16: 38001138-38001256 [-]
• eca-mir-191a: chr16: 38001159-38001232 [+]
• eca-mir-425: chr16: 38001590-38001732 [+]

Database links

• miRBase Tracker:MI0028397

Mature sequence eca-miR-425

• Accession: MIMAT0034749
• Sequence: 80 - ccaucgggaauaucguguccgccc - 103
• Deep sequencing: 71 reads, 1 experiments
• Evidence: experimental; Illumina [1]

References

1. PMID:24692655 "Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats" Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA Mol Biol Evol. 31:1536-1545(2014).