Stem-loop sequence eca-mir-8908m

AccessionMI0028359 (change log)
DescriptionEquus caballus miR-8908m stem-loop
Gene family MIPF0001890; mir-8908
Stem-loop
   uug    c    -----c         --aca  ug   ---   gg  c         a   ug         uag 
5'    gccu uucu      caccuugag     uu  ugu   gca  gc cugcccaga ugg  cugacuacg   a
      |||| ||||      |||||||||     ||  |||   |||  || ||||||||| |||  |||||||||   u
3'    ugga gaga      guggggcuu     aa  aca   cgu  cg gaugggucu acc  gacugaugu   u
   -ug    c    cuuucu         gcaac  gu   acu   ag  a         -   gu         gaa 
Get sequence
Deep sequencing
3543 reads, 200 reads per million, 2 experiments
Confidence Annotation confidence: high
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Genome context
Coordinates (EquCab2.0; GCF_000002305.2) Overlapping transcripts
chrX: 115862627-115862771 [-]
intergenic
Clustered miRNAs
< 10kb from eca-mir-8908m
eca-mir-8908l-1chrX: 115871267-115871411 [-]
eca-mir-8908b-4chrX: 115870758-115870898 [-]
eca-mir-8908g-1chrX: 115869760-115869842 [-]
eca-mir-8908f-4chrX: 115868381-115868481 [-]
eca-mir-8908d-1chrX: 115867856-115867974 [-]
eca-mir-8908jchrX: 115867008-115867102 [-]
eca-mir-8908f-3chrX: 115866475-115866615 [-]
eca-mir-8908a-2chrX: 115865962-115866098 [-]
eca-mir-8908k-1chrX: 115865120-115865254 [-]
eca-mir-8908c-2chrX: 115864611-115864755 [-]
eca-mir-8908mchrX: 115862627-115862771 [-]
eca-mir-8908b-5chrX: 115862119-115862259 [-]
eca-mir-8908g-2chrX: 115861091-115861233 [-]
eca-mir-8908f-2chrX: 115859723-115859863 [-]
eca-mir-8908a-1chrX: 115859210-115859346 [-]
eca-mir-8908k-2chrX: 115858390-115858484 [-]
eca-mir-8908c-1chrX: 115857861-115858005 [-]
eca-mir-8908l-2chrX: 115855806-115855950 [-]
eca-mir-8908b-3chrX: 115855297-115855437 [-]
eca-mir-8908f-1chrX: 115854781-115854921 [-]
eca-mir-8908d-2chrX: 115854275-115854413 [-]
Database links

Mature sequence eca-miR-8908m

Accession MIMAT0034717
Sequence

41 - 

cugcccagaauggugcugacuacgu

 - 65

Get sequence
Deep sequencing34 reads, 1 experiments
Evidence experimental; Illumina [1]

References

1
PMID:24692655 "Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats" Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA Mol Biol Evol. 31:1536-1545(2014).