Stem-loop sequence eca-mir-8908a-1

AccessionMI0028352 (change log)
DescriptionEquus caballus miR-8908a-1 stem-loop
Gene family MIPF0001890; mir-8908
Stem-loop
   --ggca  ua  -   cuu  aucca    --g  u   g   c     c  ca           --    a 
5'       ga  cu cca   ug     uucu   ug gca ugc cuacc ag  agguacugauc  gcuu g
         ||  || |||   ||     ||||   || ||| ||| ||||| ||  |||||||||||  |||| a
3'       cu  ga ggu   gc     aaga   ac cgu aug ggugg uc  uccgugacuag  ugga c
   agacua  gc  a   -uu  --aac    aca  u   a   a     a  ug           ua    g 
Get sequence
Deep sequencing
4091 reads, 250 reads per million, 2 experiments
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (EquCab2.0; GCF_000002305.2) Overlapping transcripts
chrX: 115859210-115859346 [-]
intergenic
Clustered miRNAs
< 10kb from eca-mir-8908a-1
eca-mir-8908f-4chrX: 115868381-115868481 [-]
eca-mir-8908d-1chrX: 115867856-115867974 [-]
eca-mir-8908jchrX: 115867008-115867102 [-]
eca-mir-8908f-3chrX: 115866475-115866615 [-]
eca-mir-8908a-2chrX: 115865962-115866098 [-]
eca-mir-8908k-1chrX: 115865120-115865254 [-]
eca-mir-8908c-2chrX: 115864611-115864755 [-]
eca-mir-8908mchrX: 115862627-115862771 [-]
eca-mir-8908b-5chrX: 115862119-115862259 [-]
eca-mir-8908g-2chrX: 115861091-115861233 [-]
eca-mir-8908f-2chrX: 115859723-115859863 [-]
eca-mir-8908a-1chrX: 115859210-115859346 [-]
eca-mir-8908k-2chrX: 115858390-115858484 [-]
eca-mir-8908c-1chrX: 115857861-115858005 [-]
eca-mir-8908l-2chrX: 115855806-115855950 [-]
eca-mir-8908b-3chrX: 115855297-115855437 [-]
eca-mir-8908f-1chrX: 115854781-115854921 [-]
eca-mir-8908d-2chrX: 115854275-115854413 [-]
Database links

Mature sequence eca-miR-8908a

Accession MIMAT0034713
Sequence

77 - 

aucagugccugucuaggugga

 - 97

Get sequence
Deep sequencing64 reads, 1 experiments
Evidence experimental; Illumina [1]

References

1
PMID:24692655 "Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats" Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA Mol Biol Evol. 31:1536-1545(2014).