Stem-loop sequence eca-mir-8908j

Accession

MI0028350 (change log)

Description

Equus caballus miR-8908j stem-loop

Gene family

MIPF0001890; mir-8908

Literature search

1 open access papers mention eca-mir-8908j
(1 sentences)

Stem-loop

   -- c   --g   ----   -  c         -          c  - uag 
5'   g ugu   ugu    ggu gc cuacccgga agguacugau ac c   c
     | |||   |||    ||| || ||||||||| |||||||||| || |    
3'   c aca   aca    uca ug gaugggucu uccaugauua ug g   c
   ua a   aga   acuc   a  a         g          c  u uau 

Deep sequencing

20738 reads, 1.3e+03 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (EquCab2.0; GCF_000002305.2): chrX: 115867008-115867102 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from eca-mir-8908j

• eca-mir-8908i: chrX: 115876504-115876648 [-]
• eca-mir-8908b-2: chrX: 115875682-115875772 [-]
• eca-mir-8908e: chrX: 115874599-115874743 [-]
• eca-mir-8908c-3: chrX: 115873249-115873393 [-]
• eca-mir-8908l-1: chrX: 115871267-115871411 [-]
• eca-mir-8908b-4: chrX: 115870758-115870898 [-]
• eca-mir-8908g-1: chrX: 115869760-115869842 [-]
• eca-mir-8908f-4: chrX: 115868381-115868481 [-]
• eca-mir-8908d-1: chrX: 115867856-115867974 [-]
• eca-mir-8908j: chrX: 115867008-115867102 [-]
• eca-mir-8908f-3: chrX: 115866475-115866615 [-]
• eca-mir-8908a-2: chrX: 115865962-115866098 [-]
• eca-mir-8908k-1: chrX: 115865120-115865254 [-]
• eca-mir-8908c-2: chrX: 115864611-115864755 [-]
• eca-mir-8908m: chrX: 115862627-115862771 [-]
• eca-mir-8908b-5: chrX: 115862119-115862259 [-]
• eca-mir-8908g-2: chrX: 115861091-115861233 [-]
• eca-mir-8908f-2: chrX: 115859723-115859863 [-]
• eca-mir-8908a-1: chrX: 115859210-115859346 [-]
• eca-mir-8908k-2: chrX: 115858390-115858484 [-]
• eca-mir-8908c-1: chrX: 115857861-115858005 [-]

Database links

• miRBase Tracker:MI0028350

Mature sequence eca-miR-8908j

• Accession: MIMAT0034711
• Sequence: 16 - cuacccggaagguacugaucaccua - 40
• Deep sequencing: 19157 reads, 1 experiments
• Evidence: experimental; Illumina [1]

References

1. PMID:24692655 "Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats" Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA Mol Biol Evol. 31:1536-1545(2014).