Stem-loop sequence eca-mir-8908j

AccessionMI0028350 (change log)
DescriptionEquus caballus miR-8908j stem-loop
Gene family MIPF0001890; mir-8908
Literature search

1 open access papers mention eca-mir-8908j
(1 sentences)

Stem-loop
   -- c   --g   ----   -  c         -          c  - uag 
5'   g ugu   ugu    ggu gc cuacccgga agguacugau ac c   c
     | |||   |||    ||| || ||||||||| |||||||||| || |    
3'   c aca   aca    uca ug gaugggucu uccaugauua ug g   c
   ua a   aga   acuc   a  a         g          c  u uau 
Get sequence
Deep sequencing
20738 reads, 1.3e+03 reads per million, 2 experiments
Confidence Annotation confidence: not enough data
Feedback: Do you believe this miRNA is real?
Genome context
Coordinates (EquCab2.0; GCF_000002305.2) Overlapping transcripts
chrX: 115867008-115867102 [-]
intergenic
Clustered miRNAs
< 10kb from eca-mir-8908j
eca-mir-8908ichrX: 115876504-115876648 [-]
eca-mir-8908b-2chrX: 115875682-115875772 [-]
eca-mir-8908echrX: 115874599-115874743 [-]
eca-mir-8908c-3chrX: 115873249-115873393 [-]
eca-mir-8908l-1chrX: 115871267-115871411 [-]
eca-mir-8908b-4chrX: 115870758-115870898 [-]
eca-mir-8908g-1chrX: 115869760-115869842 [-]
eca-mir-8908f-4chrX: 115868381-115868481 [-]
eca-mir-8908d-1chrX: 115867856-115867974 [-]
eca-mir-8908jchrX: 115867008-115867102 [-]
eca-mir-8908f-3chrX: 115866475-115866615 [-]
eca-mir-8908a-2chrX: 115865962-115866098 [-]
eca-mir-8908k-1chrX: 115865120-115865254 [-]
eca-mir-8908c-2chrX: 115864611-115864755 [-]
eca-mir-8908mchrX: 115862627-115862771 [-]
eca-mir-8908b-5chrX: 115862119-115862259 [-]
eca-mir-8908g-2chrX: 115861091-115861233 [-]
eca-mir-8908f-2chrX: 115859723-115859863 [-]
eca-mir-8908a-1chrX: 115859210-115859346 [-]
eca-mir-8908k-2chrX: 115858390-115858484 [-]
eca-mir-8908c-1chrX: 115857861-115858005 [-]
Database links

Mature sequence eca-miR-8908j

Accession MIMAT0034711
Sequence

16 - 

cuacccggaagguacugaucaccua

 - 40

Get sequence
Deep sequencing19157 reads, 1 experiments
Evidence experimental; Illumina [1]

References

1
PMID:24692655 "Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats" Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA Mol Biol Evol. 31:1536-1545(2014).