Stem-loop sequence eca-mir-8908e

AccessionMI0028336 (change log)
DescriptionEquus caballus miR-8908e stem-loop
Gene family MIPF0001890; mir-8908
Stem-loop
   -----------   a   u    acuu  aucc     --g  u   g   c        ca           --    a 
5'            ggc gau cucc    ug    guucu   ug gca ugc cuacccag  agguacugauc  gcuu g
              ||| ||| ||||    ||    |||||   || ||| ||| ||||||||  |||||||||||  |||| a
3'            cug uug gagg    ac    caaga   ac cgu aug gguggguc  uccgugacuag  ugga c
   ucguggucaga   a   -    guuu  --aa     aca  u   a   a        ug           ua    g 
Get sequence
Deep sequencing
4094 reads, 250 reads per million, 2 experiments
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (EquCab2.0; GCF_000002305.2) Overlapping transcripts
chrX: 115874599-115874743 [-]
intergenic
Clustered miRNAs
< 10kb from eca-mir-8908e
eca-mir-8908hchrX: 115879532-115879676 [-]
eca-mir-8908b-1chrX: 115877541-115877631 [-]
eca-mir-8908ichrX: 115876504-115876648 [-]
eca-mir-8908b-2chrX: 115875682-115875772 [-]
eca-mir-8908echrX: 115874599-115874743 [-]
eca-mir-8908c-3chrX: 115873249-115873393 [-]
eca-mir-8908l-1chrX: 115871267-115871411 [-]
eca-mir-8908b-4chrX: 115870758-115870898 [-]
eca-mir-8908g-1chrX: 115869760-115869842 [-]
eca-mir-8908f-4chrX: 115868381-115868481 [-]
eca-mir-8908d-1chrX: 115867856-115867974 [-]
eca-mir-8908jchrX: 115867008-115867102 [-]
eca-mir-8908f-3chrX: 115866475-115866615 [-]
eca-mir-8908a-2chrX: 115865962-115866098 [-]
eca-mir-8908k-1chrX: 115865120-115865254 [-]
eca-mir-8908c-2chrX: 115864611-115864755 [-]
Database links

Mature sequence eca-miR-8908e

Accession MIMAT0034702
Sequence

41 - 

uacccagcaagguacugaucgcuua

 - 65

Get sequence
Deep sequencing4029 reads, 1 experiments
Evidence experimental; Illumina [1]

References

1
PMID:24692655 "Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats" Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA Mol Biol Evol. 31:1536-1545(2014).