Stem-loop sequence cel-mir-8211

Accession

MI0026847 (change log)

Description

Caenorhabditis elegans miR-8211 stem-loop

Stem-loop

   --a        -          cgugaa    c 
5'    cucgaggc cggugagcug      augg c
      |||||||| ||||||||||      ||||  
3'    gagcuucg gccgcucggc      uauc g
   caa        a          auuauc    g 

Deep sequencing

16 reads, 0 reads per million, 7 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (WBcel235; GCA_000002985.3): chrIII: 11936916-11936980 [-]
• Overlapping transcripts:

  sense

  Y56A3A.7a ; Y56A3A.7a; intron 9

  Y56A3A.7b ; Y56A3A.7b; exon 11

Clustered miRNAs

< 10kb from cel-mir-8211

• cel-mir-8211: chrIII: 11936916-11936980 [-]
• cel-mir-86: chrIII: 11936637-11936734 [-]

Database links

• miRBase Tracker:MI0026847

Mature sequence cel-miR-8211-5p

• Accession: MIMAT0032842
• Sequence: 1 - acucgaggccggugagcugc - 20
• Deep sequencing: 7 reads, 5 experiments
• Evidence: experimental; Illumina [1]

Mature sequence cel-miR-8211-3p

• Accession: MIMAT0032843
• Sequence: 43 - acggcucgccgagcuucgagaac - 65
• Deep sequencing: 7 reads, 3 experiments
• Evidence: experimental; Illumina [1]

References

1. PMID:23729632 "Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes" Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C Genome Biol Evol. 5:1246-1260(2013).