Stem-loop sequence cel-mir-2217b-1

AccessionMI0026844 (change log)
DescriptionCaenorhabditis elegans miR-2217b-1 stem-loop
Gene family MIPF0001912; mir-2217
Stem-loop
   -- ag        guc  u          aa 
5'   c  agcgggca   gg gucaaucugc  c
     |  ||||||||   || ||||||||||  a
3'   g  uuguucgu   cc caguuggacg  a
   cg cu        guu  -          au 
Get sequence
Deep sequencing
142 reads, 0 reads per million, 12 experiments
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (WBcel235; GCA_000002985.3) Overlapping transcripts
chrX: 17608227-17608288 [+]
antisense
C16H3.3a ; C16H3.3a; intron 2
Clustered miRNAs
< 10kb from cel-mir-2217b-1
cel-mir-63chrX: 17598765-17598868 [-]
cel-mir-2217b-1chrX: 17608227-17608288 [+]
Database links

Mature sequence cel-miR-2217b-1-5p

Accession MIMAT0032839
Sequence

1 - 

cagagcgggcagucggugucaauc

 - 24

Get sequence
Deep sequencing79 reads, 11 experiments
Evidence experimental; Illumina [1]

Mature sequence cel-miR-2217b-3p

Accession MIMAT0032840
Sequence

40 - 

uugacccuugugcuuguuucggc

 - 62

Get sequence
Deep sequencing251 reads, 11 experiments
Evidence experimental; Illumina [1]

References

1
PMID:23729632 "Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes" Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C Genome Biol Evol. 5:1246-1260(2013).