Stem-loop sequence cel-mir-8200

Accession

MI0026831 (change log)

Description

Caenorhabditis elegans miR-8200 stem-loop

Stem-loop

   --              a         ug 
5'   uggcucaaaucucc gucagaccc  a
     |||||||||||||| |||||||||   
3'   accgaguuuagagg cagucuggg  u
   cu              g         ug 

Deep sequencing

48 reads, 0 reads per million, 8 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (WBcel235; GCA_000002985.3): chrV: 3057062-3057117 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0026831

Mature sequence cel-miR-8200-5p

• Accession: MIMAT0032813
• Sequence: 1 - uggcucaaaucuccagucagacc - 23
• Deep sequencing: 3 reads, 2 experiments
• Evidence: experimental; Illumina [1]

Mature sequence cel-miR-8200-3p

• Accession: MIMAT0032814
• Sequence: 34 - ucugacgggagauuugagccauc - 56
• Deep sequencing: 44 reads, 7 experiments
• Evidence: experimental; Illumina [1]

References

1. PMID:23729632 "Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes" Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C Genome Biol Evol. 5:1246-1260(2013).