Stem-loop sequence cel-mir-8198

Accession

MI0026829 (change log)

Description

Caenorhabditis elegans miR-8198 stem-loop

Stem-loop

   -         u  ---    u        --      c 
5'  uugaacagu uc   aauu guuuuuaa  auuguu u
    ||||||||| ||   |||| ||||||||  ||||||  
3'  aacuuguca ag   uuaa uaagaauu  uaacaa a
   a         u  gca    u        uu      c 

Deep sequencing

15351 reads, 88.2 reads per million, 17 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (WBcel235; GCA_000002985.3): chrIV: 16214390-16214461 [-]
• Overlapping transcripts:

  sense

  H25K10.62 ; H25K10.62; exon 1

  H25K10.37 ; H25K10.37; exon 1

Database links

• miRBase Tracker:MI0026829

Mature sequence cel-miR-8198-5p

• Accession: MIMAT0032809
• Sequence: 1 - uugaacaguuucaauuuguu - 20
• Deep sequencing: 6 reads, 4 experiments
• Evidence: experimental; Illumina [1]

Mature sequence cel-miR-8198-3p

• Accession: MIMAT0032810
• Sequence: 52 - uaauuacggauacuguucaaa - 72
• Deep sequencing: 15327 reads, 17 experiments
• Evidence: experimental; Illumina [1]

References

1. PMID:23729632 "Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes" Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C Genome Biol Evol. 5:1246-1260(2013).