Stem-loop sequence cel-mir-8192

Accession

MI0026823 (change log)

Description

Caenorhabditis elegans miR-8192 stem-loop

Stem-loop

   --c    g  c       ag       ---u     u   u 
5'    gguc ag gagucuc  ucggccg    ggcgg gcg u
      |||| || |||||||  |||||||    ||||| |||  
3'    ccgg uu cucagag  agccggu    ucguc cgu g
   cgu    g  a       aa       gugu     -   a 

Deep sequencing

28 reads, 0 reads per million, 9 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (WBcel235; GCA_000002985.3): chrII: 6943941-6944018 [+]
• Overlapping transcripts:

  sense

  F22D3.9 ; F22D3.9; exon 1

  F22D3.2h ; F22D3.2h; intron 2

  F22D3.2a ; F22D3.2a; intron 13

  F22D3.2d ; F22D3.2d; intron 13

  F22D3.2e ; F22D3.2e; intron 13

  F22D3.2g ; F22D3.2g; intron 13

Database links

• miRBase Tracker:MI0026823

Mature sequence cel-miR-8192-5p

• Accession: MIMAT0032797
• Sequence: 1 - cggucgagcgagucucagucggc - 23
• Deep sequencing: 5 reads, 4 experiments
• Evidence: experimental; Illumina [1]

Mature sequence cel-miR-8192-3p

• Accession: MIMAT0032798
• Sequence: 56 - cgaaagagacucauugggccugc - 78
• Deep sequencing: 21 reads, 8 experiments
• Evidence: experimental; Illumina [1]

References

1. PMID:23729632 "Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes" Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C Genome Biol Evol. 5:1246-1260(2013).