Stem-loop sequence mmu-mir-3473g

Accession

MI0026054 (change log)

Symbol

MGI:Mir3473g

Description

Mus musculus miR-3473g stem-loop

Literature search

3 open access papers mention mmu-mir-3473g
(69 sentences)

Stem-loop

   -------c   gca  u       g   u   cac      a        a   u   a         g  a 
5'         ucu   ag ggagcaa ugc cac   cgagcc ucucucca ccu cau uuuguauuu uu g
           |||   || ||||||| ||| |||   |||||| |||||||| ||| ||| ||||||||| ||  
3'         agg   uc ucucguu aug gug   guuugg agaggggu gga gug aaacaugaa aa a
   uugacacc   aaa  u       -   u   -ac      g        c   -   a         g  c 

Deep sequencing

777 reads, 166 reads per million, 92 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr2: 126902250-126902385 [-]
• Overlapping transcripts:

  sense

  OTTMUST00000038174 ; RP23-130L11.5-003; intron 9

  OTTMUST00000037953 ; RP23-130L11.5-001; intron 14

  ENSMUST00000143700 ; Sppl2a-003; intron 9

  ENSMUST00000028844 ; Sppl2a-001; intron 14

Database links

• MGI:Mir3473g
• miRBase Tracker:MI0026054

Mature sequence mmu-miR-3473g

• Accession: MIMAT0031427
• Sequence: 77 - caaaagugaggcuggggaga - 96
• Deep sequencing: 716 reads, 74 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:mmu-miR-3473g
  • miRDB:mmu-miR-3473g

References

1. PMID:23185045 "Profiling of T helper cell-derived small RNAs reveals unique antisense transcripts and differential association of miRNAs with argonaute proteins 1 and 2" Polikepahad S, Corry DB Nucleic Acids Res. 41:1164-1177(2013).