Stem-loop sequence stu-MIR399m

Accession

MI0025975 (change log)

Description

Solanum tuberosum miR399m stem-loop

Gene family

MIPF0000015; MIR399

Literature search

4 open access papers mention stu-MIR399m
(15 sentences)

Stem-loop

   --    ua      a     a  -  u   ua 
5'   gggc  cucucu uuggc ug ca uug  u
     ||||  |||||| ||||| || || |||  a
3'   cccg  gagagg aaccg ac gu gac  u
   gu    uc      a     c  a  c   uu 

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (SolTub3.0; GCA_000226075.1): JH137943.1: 1343553-1343616 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from stu-MIR399m

• stu-MIR399d: JH137943.1: 1350997-1351060 [+]
• stu-MIR399f: JH137943.1: 1348794-1348857 [-]
• stu-MIR399c: JH137943.1: 1345907-1345970 [+]
• stu-MIR399m: JH137943.1: 1343553-1343616 [-]
• stu-MIR399l: JH137943.1: 1337176-1337239 [-]

Database links

• miRBase Tracker:MI0025975

Mature sequence stu-miR399m-5p

• Accession: MIMAT0031318
• Sequence: 1 - gggcuacucucuauuggcaug - 21
• Evidence: experimental; Illumina [1]

Mature sequence stu-miR399m-3p

• Accession: MIMAT0031319
• Sequence: 44 - cgccaaaggagagcugcccug - 64
• Evidence: experimental; Illumina [1]

References

1. PMID:23437348 "Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing" Zhang R, Marshall D, Bryan GJ, Hornyik C PLoS One. 8:e57233(2013).