Stem-loop sequence oar-mir-25

Accession

MI0025272 (change log)

Description

Ovis aries miR-25 stem-loop

Gene family

MIPF0000013; mir-25

Literature search

2 open access papers mention oar-mir-25
(2 sentences)

Stem-loop

       a ug   ag    g     uu g     u   -  acg 
5' ggcc g  uug  aggc gagac  g gcaau gcu gg   c
   |||| |  |||  |||| |||||  | ||||| ||| ||    
3' ccgg c  gac  ucug cucug  c cguua cgg cc   u
       c gu   ag    g     uu a     -   g  ccg 

Deep sequencing

9541 reads, 2.2e+03 reads per million, 13 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (Oar_v4.0; GCA_000298735.2): chr24: 36244530-36244613 [+]
• Overlapping transcripts:

  sense

  ENSOART00000019374 ; MCM7-201; intron 14

Clustered miRNAs

< 10kb from oar-mir-25

• oar-mir-106b: chr24: 36244122-36244201 [+]
• oar-mir-25: chr24: 36244530-36244613 [+]

Database links

• miRBase Tracker:MI0025272

Mature sequence oar-miR-25

• Accession: MIMAT0030050
• Sequence: 53 - auugcacuugucucggucuga - 73
• Deep sequencing: 9363 reads, 13 experiments
• Evidence: experimental; cloned [1]

References

1. PMID:23269700 "MicroRNA in the ovine mammary gland during early pregnancy: spatial and temporal expression of miR-21, miR-205, and miR-200" Galio L, Droineau S, Yeboah P, Boudiaf H, Bouet S, Truchet S, Devinoy E Physiol Genomics. 45:151-161(2013).