Stem-loop sequence mtr-MIR7696b

Accession

MI0025223 (change log)

Description

Medicago truncatula miR7696b stem-loop

Gene family

MIPF0001669; MIR7696

Literature search

1 open access papers mention mtr-MIR7696b
(2 sentences)

Stem-loop

   -ac                         c  a     ---ua    a 
5'    ugcuucaaguucucauaauucaaaa ga aaguu     ugga g
      ||||||||||||||||||||||||| || |||||     |||| u
3'    acgaaguucaagaguauuaaguuuu cu uucaa     acuu u
   cau                         u  a     uguaa    u 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (JCVI_Mt3.5.2): AC225474.24: 39289-39381 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from mtr-MIR7696b

• mtr-MIR7696c: AC225474.24: 39293-39378 [+]
• mtr-MIR7696a: AC225474.24: 39292-39379 [+]
• mtr-MIR7696d: AC225474.24: 39292-39379 [-]
• mtr-MIR7696b: AC225474.24: 39289-39381 [-]
• mtr-MIR5239: AC225474.24: 38945-39055 [-]

Database links

• miRBase Tracker:MI0025223

Mature sequence mtr-miR7696b-5p

• Accession: MIMAT0029988
• Sequence: 7 - ucaaguucucauaauucaaaa - 27
• Evidence: experimental; Illumina [1]

Mature sequence mtr-miR7696b-3p

• Accession: MIMAT0029989
• Sequence: 68 - uugaauuaugagaacuugaag - 88
• Evidence: experimental; Illumina [1]

References

1. PMID:23572382 "microRNA profiling of root tissues and root forming explant cultures in Medicago truncatula" Eyles RP, Williams PH, Ohms SJ, Weiller GF, Ogilvie HA, Djordjevic MA, Imin N Planta. 238:91-105(2013).