Stem-loop sequence mtr-MIR319d

Accession

MI0025220 (change log)

Description

Medicago truncatula miR319d stem-loop

Gene family

MIPF0000010; MIR159

Literature search

5 open access papers mention mtr-MIR319d
(16 sentences)

Stem-loop

   -agaa       uc   a                 cu  u        a    uuu    --      g   ac        u  aa       agaaga      a 
5'      aaauagu  aag gagcucucuucagucca  ca ggauagga aagg   ugaa  uuagcu cug  ucauucau ca  cacaaua      agcaug u
        |||||||  ||| |||||||||||||||||  || |||||||| ||||   ||||  |||||| |||  |||||||| ||  |||||||      |||||| g
3'      uuugucg  uuc cucgagggaagucaggu  gu ucuguucu uuuc   acuu  aaucga ggc  aguaagug gu  guguuau      ucguau a
   auaua       uu   c                 uc  u        c    --u    ua      g   gu        u  aa       -----a      a 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (JCVI_Mt3.5.2): chr3: 19927077-19927283 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0025220

Mature sequence mtr-miR319d-5p

• Accession: MIMAT0029982
• Sequence: 17 - agagcucucuucaguccacuc - 37
• Evidence: experimental; Illumina [1]

Mature sequence mtr-miR319d-3p

• Accession: MIMAT0029983
• Sequence: 172 - uuggacugaagggagcucccu - 192
• Evidence: experimental; Illumina [1]

References

1. PMID:23572382 "microRNA profiling of root tissues and root forming explant cultures in Medicago truncatula" Eyles RP, Williams PH, Ohms SJ, Weiller GF, Ogilvie HA, Djordjevic MA, Imin N Planta. 238:91-105(2013).