Stem-loop sequence mdo-mir-7398r

AccessionMI0024018 (change log)
DescriptionMonodelphis domestica miR-7398r stem-loop
Gene family MIPF0001643; mir-7398
Stem-loop
   --   u        a            uauu 
5'   uug guagaggc agaaauaugcug    c
     ||| |||||||| ||||||||||||     
3'   aac caucuccg ucuuuauauggu    a
   uu   -        c            ucuc 
Get sequence
Deep sequencing
6130 reads, 40 reads per million, 5 experiments
Confidence Annotation confidence: high
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Genome context
Coordinates (MonDom5; GCF_000002295.2) Overlapping transcripts
chrX: 57283471-57283531 [+]
intergenic
Clustered miRNAs
< 10kb from mdo-mir-7398r
mdo-mir-7398echrX: 57276306-57276364 [+]
mdo-mir-7398fchrX: 57279275-57279333 [+]
mdo-mir-7398a-1chrX: 57282764-57282822 [+]
mdo-mir-7398rchrX: 57283471-57283531 [+]
mdo-mir-7398nchrX: 57284128-57284188 [+]
mdo-mir-7398k-1chrX: 57284809-57284869 [+]
mdo-mir-7398k-2chrX: 57285473-57285533 [+]
mdo-mir-7398ochrX: 57286131-57286191 [+]
mdo-mir-7398lchrX: 57286820-57286880 [+]
mdo-mir-7398mchrX: 57287463-57287521 [+]
mdo-mir-7398cchrX: 57288057-57288117 [+]
mdo-mir-7398bchrX: 57288723-57288783 [+]
mdo-mir-7398vchrX: 57289402-57289462 [+]
mdo-mir-7398a-2chrX: 57291703-57291761 [+]
mdo-mir-7398a-4chrX: 57292644-57292702 [+]
mdo-mir-7398a-3chrX: 57293442-57293500 [+]
Database links

Mature sequence mdo-miR-7398r-5p

Accession MIMAT0028902
Sequence

1 - 

uuguguagaggcaagaaauaugc

 - 23

Get sequence
Deep sequencing5585 reads, 5 experiments
Evidence experimental; Illumina [1]
Predicted targets

Mature sequence mdo-miR-7398r-3p

Accession MIMAT0028903
Sequence

40 - 

auauuucucgccucuaccaauu

 - 61

Get sequence
Deep sequencing545 reads, 5 experiments
Evidence experimental; Illumina [1]
Predicted targets

References

1
PMID:23034410 "Birth and expression evolution of mammalian microRNA genes" Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H Genome Res. 23:34-45(2013).