Stem-loop sequence mdo-mir-7373d

Accession

MI0023961 (change log)

Description

Monodelphis domestica miR-7373d stem-loop

Stem-loop

   --         u      u  agaagu    u 
5'   aagcccuuu auuauu gu      gauc u
     ||||||||| |||||| ||      |||| a
3'   uucgggaag uaauaa cg      cuag u
   cg         -      -  ----au    u 

Deep sequencing

263 reads, 0 reads per million, 5 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (MonDom5; GCF_000002295.2): chrX: 44689543-44689601 [-]
• Overlapping transcripts:

  sense

  ENSMODT00000039010 ; FGF13-201; intron 4

  antisense

  ENSMODT00000017861 ; intron 4

Clustered miRNAs

< 10kb from mdo-mir-7373d

• mdo-mir-7373d: chrX: 44689543-44689601 [-]
• mdo-mir-7373c: chrX: 44688608-44688663 [-]
• mdo-mir-7373f: chrX: 44688086-44688149 [-]
• mdo-mir-7373b: chrX: 44687808-44687862 [-]
• mdo-mir-7374d: chrX: 44686439-44686494 [-]
• mdo-mir-7374b: chrX: 44682076-44682130 [-]
• mdo-mir-7374c: chrX: 44681360-44681416 [-]
• mdo-mir-7375c-2: chrX: 44679658-44679714 [-]

Database links

• miRBase Tracker:MI0023961

Mature sequence mdo-miR-7373d-5p

• Accession: MIMAT0028806
• Sequence: 1 - aagcccuuuuauuauuuguagaa - 23
• Deep sequencing: 46 reads, 3 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:mdo-miR-7373d-5p

Mature sequence mdo-miR-7373d-3p

• Accession: MIMAT0028807
• Sequence: 39 - uagcaauaaugaagggcuugc - 59
• Deep sequencing: 216 reads, 4 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:mdo-miR-7373d-3p

References

1. PMID:23034410 "Birth and expression evolution of mammalian microRNA genes" Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H Genome Res. 23:34-45(2013).